Detailed information of SNP:
|
SNP ID:
sf0317008383(Gbrowse)
Chromosome: chr03 Position: 17008383 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 799 | 74.47% | 25.53% |
| All Japonica | 496 | 25.40% | 74.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 334 | 35.03% | 64.97% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317008383 | G->A | LOC_Os03g29850(LOC_Os03g29850.1) | INTRON |