Detailed information of SNP:
|
SNP ID:
sf0317008415(Gbrowse)
Chromosome: chr03 Position: 17008415 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1167 | 51.76% | 48.24% |
| All Indica | 570 | 36.49% | 63.51% |
| All Japonica | 496 | 74.80% | 25.20% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 310 | 4.19% | 95.81% |
| Indica II | 148 | 91.22% | 8.78% |
| Indica Intermediate | 112 | 53.57% | 46.43% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 3 | 100.00% | 0.00% |
| Intermediate | 31 | 67.74% | 32.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317008415 | T->C | LOC_Os03g29850(LOC_Os03g29850.1) | INTRON |