Detailed information of SNP:
|
SNP ID:
sf0317010419(Gbrowse)
Chromosome: chr03 Position: 17010419 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.32% | 49.68% |
| All Indica | 799 | 25.41% | 74.59% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 2.93% | 97.07% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 27.49% | 72.51% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317010419 | T->A | INTERGENIC | None |