Detailed information of SNP:
|
SNP ID:
sf0317011251(Gbrowse)
Chromosome: chr03 Position: 17011251 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.87% | 43.13% |
| All Indica | 799 | 51.06% | 48.94% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 65.07% | 34.93% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317011251 | T->C | INTERGENIC | None |