Detailed information of SNP:
|
SNP ID:
sf0317013221(Gbrowse)
Chromosome: chr03 Position: 17013221 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 797 | 74.15% | 25.85% |
| All Japonica | 497 | 25.35% | 74.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 38.21% | 61.79% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 335 | 34.93% | 65.07% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317013221 | A->G | INTERGENIC | None |