Detailed information of SNP:



SNP ID: sf0317017674(Gbrowse)

Chromosome: chr03

Position: 17017674
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1419 92.74% 7.26%
All Indica799 100.00% 0.00%
All Japonica497 79.28% 20.72%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 69.55% 30.45%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0317017674 C->A LOC_Os03g29864(LOC_Os03g29864.1) Non-Synonymous SNP