Detailed information of SNP:
|
SNP ID:
sf0317020670(Gbrowse)
Chromosome: chr03 Position: 17020670 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 89.14% | 10.86% |
| All Indica | 786 | 96.56% | 3.44% |
| All Japonica | 484 | 79.75% | 20.25% |
| Aus | 30 | 50.00% | 50.00% |
| Indica I | 369 | 98.64% | 1.36% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 205 | 94.15% | 5.85% |
| Temperate Japonica | 326 | 71.47% | 28.53% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317020670 | T->A | LOC_Os03g29864(LOC_Os03g29864.1) | Synonymous |