Detailed information of SNP:
|
SNP ID:
sf0317030861(Gbrowse)
Chromosome: chr03 Position: 17030861 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 53.41% | 46.59% |
| All Indica | 775 | 18.84% | 81.16% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 362 | 12.15% | 87.85% |
| Indica II | 209 | 18.18% | 81.82% |
| Indica Intermediate | 204 | 31.37% | 68.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317030861 | A->G | LOC_Os03g29900(LOC_Os03g29900.1) | Synonymous |