Detailed information of SNP:
|
SNP ID:
sf0317031315(Gbrowse)
Chromosome: chr03 Position: 17031315 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 56.50% | 43.50% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 7 | 85.71% | 14.29% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317031315 | A->G | LOC_Os03g29900(LOC_Os03g29900.1) | Non-Synonymous SNP |