Detailed information of SNP:
|
SNP ID:
sf0317036593(Gbrowse)
Chromosome: chr03 Position: 17036593 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 66.15% | 33.85% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 496 | 22.98% | 77.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 334 | 30.24% | 69.76% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317036593 | T->C | INTERGENIC | None |