Detailed information of SNP:
|
SNP ID:
sf0317063184(Gbrowse)
Chromosome: chr03 Position: 17063184 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 61.77% | 38.23% |
| All Indica | 796 | 94.47% | 5.53% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317063184 | A->G | LOC_Os03g29940(LOC_Os03g29940.1) | Non-Synonymous SNP |