Detailed information of SNP:



SNP ID: sf0317063184(Gbrowse)

Chromosome: chr03

Position: 17063184
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 61.77% 38.23%
All Indica796 94.47% 5.53%
All Japonica497 4.63% 95.37%
Aus67 89.55% 10.45%
Indica I373 98.12% 1.88%
Indica II212 89.15% 10.85%
Indica Intermediate211 93.36% 6.64%
Temperate Japonica335 4.18% 95.82%
Tropical Japonica94 8.51% 91.49%
Japonica Intermediate68 1.47% 98.53%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0317063184 A->G LOC_Os03g29940(LOC_Os03g29940.1) Non-Synonymous SNP