Detailed information of SNP:
|
SNP ID:
sf0317096768(Gbrowse)
Chromosome: chr03 Position: 17096768 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.52% | 38.48% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317096768 | A->G | INTERGENIC | None |