Detailed information of SNP:
|
SNP ID:
sf0317105872(Gbrowse)
Chromosome: chr03 Position: 17105872 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 92.32% | 7.68% |
| All Indica | 761 | 86.73% | 13.27% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 99.16% | 0.84% |
| Indica II | 201 | 59.20% | 40.80% |
| Indica Intermediate | 201 | 92.04% | 7.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317105872 | C->T | INTERGENIC | None |