Detailed information of SNP:
|
SNP ID:
sf0317131094(Gbrowse)
Chromosome: chr03 Position: 17131094 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 59.25% | 40.75% |
| All Indica | 796 | 91.58% | 8.42% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317131094 | A->G | INTERGENIC | None |