Detailed information of SNP:
|
SNP ID:
sf0317131194(Gbrowse)
Chromosome: chr03 Position: 17131194 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.17% | 38.83% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317131194 | A->G | INTERGENIC | None |