Detailed information of SNP:
|
SNP ID:
sf0317136320(Gbrowse)
Chromosome: chr03 Position: 17136320 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.62% | 37.38% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317136320 | T->C | INTERGENIC | None |