Detailed information of SNP:
|
SNP ID:
sf0317136685(Gbrowse)
Chromosome: chr03 Position: 17136685 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 53.53% | 46.47% |
| All Indica | 785 | 83.57% | 16.43% |
| All Japonica | 496 | 3.63% | 96.37% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 370 | 92.97% | 7.03% |
| Indica II | 208 | 71.15% | 28.85% |
| Indica Intermediate | 207 | 79.23% | 20.77% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317136685 | T->C | LOC_Os03g30040(LOC_Os03g30040.1) | INTRON |