Detailed information of SNP:
|
SNP ID:
sf0317139004(Gbrowse)
Chromosome: chr03 Position: 17139004 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 94.93% | 5.07% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 445 | 84.94% | 15.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 78.93% | 21.07% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317139004 | C->T | INTERGENIC | None |