Detailed information of SNP:
|
SNP ID:
sf0317163459(Gbrowse)
Chromosome: chr03 Position: 17163459 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 63.40% | 36.60% |
| All Indica | 790 | 94.68% | 5.32% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317163459 | A->G | LOC_Os03g30088(LOC_Os03g30088.1) | INTRON |