Detailed information of SNP:
|
SNP ID:
sf0317221133(Gbrowse)
Chromosome: chr03 Position: 17221133 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 95.54% | 4.46% |
| All Indica | 794 | 97.73% | 2.27% |
| All Japonica | 496 | 92.14% | 7.86% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317221133 | T->A | INTERGENIC | None |