Detailed information of SNP:
|
SNP ID:
sf0317221499(Gbrowse)
Chromosome: chr03 Position: 17221499 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 90.36% | 9.64% |
| All Indica | 781 | 84.38% | 15.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 366 | 85.52% | 14.48% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 206 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317221499 | A->G | LOC_Os03g30180(LOC_Os03g30180.1) | Non-Synonymous SNP |