Detailed information of SNP:
|
SNP ID:
sf0317227260(Gbrowse)
Chromosome: chr03 Position: 17227260 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 79.39% | 20.61% |
| All Indica | 787 | 65.18% | 34.82% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 62.87% | 37.13% |
| Indica II | 211 | 63.98% | 36.02% |
| Indica Intermediate | 207 | 70.53% | 29.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317227260 | T->C | LOC_Os03g30190(LOC_Os03g30190.1) | Synonymous |