Detailed information of SNP:
|
SNP ID:
sf0317234561(Gbrowse)
Chromosome: chr03 Position: 17234561 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 57.25% | 42.75% |
| All Indica | 793 | 90.16% | 9.84% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 210 | 84.76% | 15.24% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317234561 | C->T | INTERGENIC | None |