Detailed information of SNP:
|
SNP ID:
sf0317239289(Gbrowse)
Chromosome: chr03 Position: 17239289 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.30% | 39.70% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317239289 | T->A | LOC_Os03g30200(LOC_Os03g30200.2) | INTRON |
| sf0317239289 | T->A | LOC_Os03g30200(LOC_Os03g30200.1) | INTRON |