Detailed information of SNP:
|
SNP ID:
sf0317243467(Gbrowse)
Chromosome: chr03 Position: 17243467 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 87.79% | 12.21% |
| All Indica | 764 | 80.24% | 19.76% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 59 | 77.97% | 22.03% |
| Indica I | 362 | 81.49% | 18.51% |
| Indica II | 202 | 79.70% | 20.30% |
| Indica Intermediate | 200 | 78.50% | 21.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317243467 | A->C | INTERGENIC | None |