Detailed information of SNP:
|
SNP ID:
sf0317246178(Gbrowse)
Chromosome: chr03 Position: 17246178 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 55.89% | 44.11% |
| All Indica | 789 | 30.54% | 69.46% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 370 | 27.03% | 72.97% |
| Indica II | 212 | 35.38% | 64.62% |
| Indica Intermediate | 207 | 31.88% | 68.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317246178 | G->A | INTERGENIC | None |