Detailed information of SNP:



SNP ID: sf0317246608(Gbrowse)

Chromosome: chr03

Position: 17246608
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 98.87% 1.13%
All Indica799 100.00% 0.00%
All Japonica496 96.98% 3.02%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica93 90.32% 9.68%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0317246608 C->T INTERGENIC None