Detailed information of SNP:
|
SNP ID:
sf0317300706(Gbrowse)
Chromosome: chr03 Position: 17300706 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1341 | 93.21% | 6.79% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 422 | 80.57% | 19.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 276 | 93.48% | 6.52% |
| Tropical Japonica | 87 | 57.47% | 42.53% |
| Japonica Intermediate | 59 | 54.24% | 45.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317300706 | C->T | INTERGENIC | None |