Detailed information of SNP:
|
SNP ID:
sf0317320659(Gbrowse)
Chromosome: chr03 Position: 17320659 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 55.07% | 44.93% |
| All Indica | 687 | 89.52% | 10.48% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 305 | 91.80% | 8.20% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 179 | 88.27% | 11.73% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 5 | 60.00% | 40.00% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317320659 | T->C | LOC_Os03g30370(LOC_Os03g30370.1) | Non-Synonymous SNP |