Detailed information of SNP:
|
SNP ID:
sf0317331942(Gbrowse)
Chromosome: chr03 Position: 17331942 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 96.70% | 3.30% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 473 | 91.33% | 8.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 97.51% | 2.49% |
| Tropical Japonica | 89 | 69.66% | 30.34% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317331942 | T->C | INTERGENIC | None |