Detailed information of SNP:
|
SNP ID:
sf0317413511(Gbrowse)
Chromosome: chr03 Position: 17413511 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 59.41% | 40.59% |
| All Indica | 795 | 95.47% | 4.53% |
| All Japonica | 478 | 6.07% | 93.93% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 318 | 3.14% | 96.86% |
| Tropical Japonica | 92 | 8.70% | 91.30% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317413511 | A->G | INTERGENIC | None |