Detailed information of SNP:
|
SNP ID:
sf0317441179(Gbrowse)
Chromosome: chr03 Position: 17441179 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 57.74% | 42.26% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317441179 | G->T | INTERGENIC | None |