Detailed information of SNP:
|
SNP ID:
sf0317473928(Gbrowse)
Chromosome: chr03 Position: 17473928 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 58.45% | 41.55% |
| All Indica | 796 | 97.11% | 2.89% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317473928 | C->T | INTERGENIC | None |