Detailed information of SNP:
|
SNP ID:
sf0317474383(Gbrowse)
Chromosome: chr03 Position: 17474383 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.06% | 41.94% |
| All Indica | 797 | 96.36% | 3.64% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317474383 | T->C | INTERGENIC | None |