Detailed information of SNP:
|
SNP ID:
sf0317477592(Gbrowse)
Chromosome: chr03 Position: 17477592 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.30% | 42.70% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317477592 | C->T | INTERGENIC | None |