Detailed information of SNP:
|
SNP ID:
sf0317478110(Gbrowse)
Chromosome: chr03 Position: 17478110 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317478110 | A->G | INTERGENIC | None |