Detailed information of SNP:
|
SNP ID:
sf0317491210(Gbrowse)
Chromosome: chr03 Position: 17491210 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.07% | 41.93% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317491210 | C->T | INTERGENIC | None |