Detailed information of SNP:
|
SNP ID:
sf0317494121(Gbrowse)
Chromosome: chr03 Position: 17494121 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 66.01% | 33.99% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 495 | 10.10% | 89.90% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 11.98% | 88.02% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317494121 | C->T | INTERGENIC | None |