Detailed information of SNP:
|
SNP ID:
sf0317496859(Gbrowse)
Chromosome: chr03 Position: 17496859 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1358 | 96.98% | 3.02% |
| All Indica | 761 | 95.40% | 4.60% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 49 | 95.92% | 4.08% |
| Indica I | 354 | 96.89% | 3.11% |
| Indica II | 205 | 95.12% | 4.88% |
| Indica Intermediate | 202 | 93.07% | 6.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317496859 | A->C | LOC_Os03g30710(LOC_Os03g30710.1) | INTRON |