Detailed information of SNP:
|
SNP ID:
sf0317580654(Gbrowse)
Chromosome: chr03 Position: 17580654 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.39% | 37.61% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317580654 | T->C | INTERGENIC | None |