Detailed information of SNP:
|
SNP ID:
sf0317629952(Gbrowse)
Chromosome: chr03 Position: 17629952 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1343 | 52.94% | 47.06% |
| All Indica | 726 | 23.55% | 76.45% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 326 | 19.02% | 80.98% |
| Indica II | 203 | 25.12% | 74.88% |
| Indica Intermediate | 197 | 29.44% | 70.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317629952 | C->T | INTERGENIC | None |