Detailed information of SNP:
|
SNP ID:
sf0317652954(Gbrowse)
Chromosome: chr03 Position: 17652954 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.31% | 38.69% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 3.82% | 96.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317652954 | T->G | LOC_Os03g30990(LOC_Os03g30990.1) | INTRON |