Detailed information of SNP:
|
SNP ID:
sf0317653827(Gbrowse)
Chromosome: chr03 Position: 17653827 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.97% | 40.03% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317653827 | G->A | INTERGENIC | None |