Detailed information of SNP:



SNP ID: sf0317662910(Gbrowse)

Chromosome: chr03

Position: 17662910
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1418 50.71% 49.29%
All Indica798 78.20% 21.80%
All Japonica497 0.60% 99.40%
Aus67 100.00% 0.00%
Indica I374 58.02% 41.98%
Indica II213 96.24% 3.76%
Indica Intermediate211 95.73% 4.27%
Temperate Japonica335 0.30% 99.70%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 0.00% 100.00%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 57.14% 42.86%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0317662910 G->C LOC_Os03g31000(LOC_Os03g31000.1) INTRON