Detailed information of SNP:
|
SNP ID:
sf0317754927(Gbrowse)
Chromosome: chr03 Position: 17754927 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 60.55% | 39.45% |
| All Indica | 787 | 95.30% | 4.70% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 95.15% | 4.85% |
| Indica II | 210 | 95.24% | 4.76% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317754927 | C->T | LOC_Os03g31180(LOC_Os03g31180.1) | INTRON |
| sf0317754927 | C->T | LOC_Os03g31180(LOC_Os03g31180.2) | INTRON |