Detailed information of SNP:
|
SNP ID:
sf0317792456(Gbrowse)
Chromosome: chr03 Position: 17792456 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.83% | 37.17% |
| All Indica | 798 | 96.37% | 3.63% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317792456 | C->T | LOC_Os03g31250(LOC_Os03g31250.1) | INTRON |