Detailed information of SNP:
SNP ID:
sf0317871799(Gbrowse)
Chromosome: chr03 Position: 17871799 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 63.21% | 36.79% |
All Indica | 799 | 97.25% | 2.75% |
All Japonica | 497 | 6.04% | 93.96% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 375 | 97.87% | 2.13% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 97.16% | 2.84% |
Temperate Japonica | 335 | 0.30% | 99.70% |
Tropical Japonica | 94 | 28.72% | 71.28% |
Japonica Intermediate | 68 | 2.94% | 97.06% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0317871799 | G->A | LOC_Os03g31370(LOC_Os03g31370.1) | INTRON |