Detailed information of SNP:
|
SNP ID:
sf0317918166(Gbrowse)
Chromosome: chr03 Position: 17918166 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 76.74% | 23.26% |
| All Indica | 799 | 70.46% | 29.54% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317918166 | A->G | INTERGENIC | None |