Detailed information of SNP:
|
SNP ID:
sf0317943173(Gbrowse)
Chromosome: chr03 Position: 17943173 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 95.41% | 4.59% |
| All Indica | 754 | 92.18% | 7.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 353 | 94.90% | 5.10% |
| Indica II | 200 | 90.50% | 9.50% |
| Indica Intermediate | 201 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317943173 | C->T | INTERGENIC | None |