Detailed information of SNP:
|
SNP ID:
sf0317956718(Gbrowse)
Chromosome: chr03 Position: 17956718 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.90% | 39.10% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0317956718 | T->G | LOC_Os03g31520(LOC_Os03g31520.1) | INTRON |